Packages

Below are the packages included in CHoRUS. For each package a link is provided with more information, including instructions on how to install and use the package.

Data Extract Preparation

• chorus-extract-upload

  Tools to assemble and submit CHoRUS data extracts
  Learn more…

Cloud Applications

• chorus-ares

  Containerized application to deploy the Ares tool for network-oriented OMOP data review
  Learn more…

• chorus-athena

  Containerized applications to deploy the Athena vocabulary search tool
  Learn more…

• chorus-etl

  Containerized application to support data ingestion, processing, and merging on the central cloud
  Learn more…

• chorus-portals

  Containerized applications to support user access, authentication, and interaction with the cloud environment
  Learn more…

• chorus-reports

  Containerized application to quickly deploy the CHoRUSReports tool and its associated dependencies
  Learn more…

• CHoRUSReports

  R Package to generate a document with quality metrics to feedback to sites following data upload
  Learn more…

• CADA

  Tool for adjudication and annotation of patient records
  Learn more…

• IVe

  Tool to view and interrogate multimodal clinical data
  Learn more…

PHI and De-Identification

• privacy_scan_tool

  Various tools to search for PHI in medical records and associated data modalities
  Learn more…

Modality-Specific

• chorus_waveform

  Tools for interacting with waveform data
  Learn more…

• chorus_imaging

  Tools for interacting with imaging data
  Learn more…

Documentation

• Chorus_SOP

  Docusaurus-based code to construct a webpage for browsing approved SOPs
  Learn more…

• chorus-developer

  Jekyll-based code to construct a webpage housing package metadata and best practices for developers
  Learn more…